PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_72654.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 101aa    MW: 10714.3 Da    PI: 9.7693
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_72654.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-0877100225
                              -S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                              +++ C+f++++G C+ G+ C++ H
  Rsa1.0_72654.1_g00001.1  77 GQRVCKFHRENGNCRKGAACTYLH 100
                              6899******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.13175101IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-677100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-579101IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
QAPGSSTSSG WMQPGQGMQS GSNNQNWGTQ NQTAMPSGGS GGNQTGYWGN QQNQNGDSGY  60
GWNRQSSGSG GHNNFKGQRV CKFHRENGNC RKGAACTYLH N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112389.12e-59PREDICTED: zinc finger CCCH domain-containing protein 19
RefseqXP_013655839.12e-59PREDICTED: zinc finger CCCH domain-containing protein 19-like isoform X1
RefseqXP_013655840.12e-59PREDICTED: zinc finger CCCH domain-containing protein 19-like isoform X2
SwissprotQ9SIV51e-47C3H19_ARATH; Zinc finger CCCH domain-containing protein 19
TrEMBLM4F8882e-59M4F888_BRARP; Uncharacterized protein
STRINGBra037299.1-P6e-59(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54221620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.17e-49nucleic acid binding;zinc ion binding;DNA binding